pymol-mcp

Headless PyMOL MCP server for molecular visualization, GROMACS/LAMMPS MD workflows, and clathrate-hydrate cage analysis

What does this entry provide?

pymol-mcp is an MCP server entry in ChatHome Skills, sourced from GitHub MCP Search and scored 44/100. Headless PyMOL MCP server for molecular visualization, GROMACS/LAMMPS MD workflows, and clathrate-hydrate cage analysis. As a Model Context Protocol server, it exposes tools that MCP-compatible LLM clients such as Claude, Cursor, and Copilot can call directly, extending an agent's reach beyond its built-in capabilities. ChatHome Skills discovered this entry through its daily ingest of official registries and GitHub discovery queries, and re-verifies repository facts, freshness signals, and install metadata on every run. The quality score weighs official-registry presence, a working install command, license clarity, GitHub star trajectory, and repository freshness — the full formula is on the Sources page. The install command above is ready to copy. Review the last-pushed date and repository status before adding pymol-mcp to a production agent workflow; the snapshot facts below are point-in-time values from the most recent ingest.

Snapshot facts

Source: GitHub MCP Search
Quality: 44/100
Install method: source code
Repo: wjgoarxiv/pymol-mcp
Repo updated: Sep 2, 2026

Source checkout

git clone https://github.com/wjgoarxiv/pymol-mcp.git

Install method: source code

Review the upstream source before running this command.

GitHub project

Quality

Repo stars

Repo updated

Sep 2, 2026

How is this score calculated?

Weighted across six dimensions, scored 0-100.
Provenance (25): listed in an official or curated registry.
Installability (25): a runnable install command beats a declared transport, which beats a source checkout.
Maintenance (20): recency of the last push; archived entries score zero here.
Adoption (20): repository stars on a log curve.
Documentation (10) and description quality (10): parsed manifest or SKILL.md frontmatter, and a real description rather than a placeholder.

Security signals

Scan coverage: Install metadata and repository README.

Automated signals from install metadata and a bounded skill body — not a full code security audit and not a recursive source or dependency review.

MCP manifest

{
  "fullName": "wjgoarxiv/pymol-mcp"
}

Discovery note

Headless PyMOL MCP server for molecular visualization, GROMACS/LAMMPS MD workflows, and clathrate-hydrate cage analysis

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