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End-to-end 16S amplicon workflow from FASTQ reads to differential abundance. Orchestrates DADA2 ASV inference, taxonomy assignment, diversity analysis, and compositional testing with ALDEx2. Use when processing 16S/ITS amplicon data.
bio-workflows-microbiome-pipeline is an agent skill entry in ChatHome Skills, sourced from GitHub Skill Search and scored 58/100. # Microbiome Pipeline ## Pipeline Overview ``` Paired-End FASTQ (16S V4) │ ▼ ┌──────────────────────────────────────────────────┐ │ microbiome-pipeline │ ├─────. As an agent skill, it packages a reusable instruction set that AI coding agents such as Codex and Claude Code can load to perform this task without hand-written glue code. ChatHome Skills discovered this entry through its daily ingest of official registries and GitHub discovery queries, and re-verifies repository facts, freshness signals, and install metadata on every run. The quality score weighs official-registry presence, a working install command, license clarity, GitHub star trajectory, and repository freshness — the full formula is on the Sources page. The install command above is ready to copy. Review the last-pushed date and repository status before adding bio-workflows-microbiome-pipeline to a production agent workflow; the snapshot facts below are point-in-time values from the most recent ingest.
codex skill install David-Li0406/meta-skill-evlovingReview the upstream source before running this command.
Scan coverage: Install metadata and the indexed document body.
Automated signals from install metadata and a bounded skill body — not a full code security audit and not a recursive source or dependency review.
# Microbiome Pipeline ## Pipeline Overview ``` Paired-End FASTQ (16S V4) │ ▼ ┌──────────────────────────────────────────────────┐ │ microbiome-pipeline │ ├─────────────────────────