kdense-pacsomatic

Operator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. Use this skill when the user needs to validate run inputs, generate pacsomatic-compliant samplesheets, prepare reproducible Nextflow launch artifacts, run locally or submit to schedulers (LSF/Slurm/PBS/SGE), and triage execution failures. Triggers on requests to run pacsomatic, prepare launch commands/scripts, perform dry-run checks, or troubleshoot pipeline startup and scheduler submission errors.

What does this entry provide?

kdense-pacsomatic is an agent skill entry in ChatHome Skills, sourced from GitHub Skill Search and scored 58/100.  # Kdense Pacsomatic Use this Codex adapter for the pinned upstream scientific skill. ## Catalog. As an agent skill, it packages a reusable instruction set that AI coding agents such as Codex and Claude Code can load to perform this task without hand-written glue code. ChatHome Skills discovered this entry through its daily ingest of official registries and GitHub discovery queries, and re-verifies repository facts, freshness signals, and install metadata on every run. The quality score weighs official-registry presence, a working install command, license clarity, GitHub star trajectory, and repository freshness — the full formula is on the Sources page. The install command above is ready to copy. Review the last-pushed date and repository status before adding kdense-pacsomatic to a production agent workflow; the snapshot facts below are point-in-time values from the most recent ingest.

Snapshot facts

Source: GitHub Skill Search
Quality: 58/100
Install method: codex
Repo: eightmm/codex-science
Repo updated: Oct 29, 2026

Install command

codex skill install eightmm/codex-science

Install method: codex

Review the upstream source before running this command.

GitHub project

Quality

Repo stars

Repo updated

Unknown

How is this score calculated?

Weighted across six dimensions, scored 0-100.
Provenance (25): listed in an official or curated registry.
Installability (25): a runnable install command beats a declared transport, which beats a source checkout.
Maintenance (20): recency of the last push; archived entries score zero here.
Adoption (20): repository stars on a log curve.

Security signals

Scan coverage: Install metadata and the indexed document body.

Automated signals from install metadata and a bounded skill body — not a full code security audit and not a recursive source or dependency review.

Discovery note

# Kdense Pacsomatic Use this Codex adapter for the pinned upstream scientific skill. ## Catalog status - Status: `i

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