BioMCP-TS

Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.

What does this entry provide?

BioMCP-TS is an MCP server entry in ChatHome Skills, sourced from Official MCP Registry and scored 73/100. As a Model Context Protocol server, it exposes tools that MCP-compatible LLM clients such as Claude, Cursor, and Copilot can call directly, extending an agent's reach beyond its built-in capabilities. ChatHome Skills discovered this entry through its daily ingest of official registries and GitHub discovery queries, and re-verifies repository facts, freshness signals, and install metadata on every run. The quality score weighs official-registry presence, a working install command, license clarity, GitHub star trajectory, and repository freshness — the full formula is on the Sources page. The install command above is ready to copy. Review the last-pushed date and repository status before adding BioMCP-TS to a production agent workflow; the snapshot facts below are point-in-time values from the most recent ingest.

Snapshot facts

Source: Official MCP Registry
Quality: 73/100
Install method: npm
Repo: yeyuan98/biomcp-ts
Repo updated: Sep 14, 2026

Install command

npx -y biomcp@1.4.3

Install method: npm

Review the upstream source before running this command.

GitHub project Homepage

Quality

Repo stars

Repo updated

Sep 14, 2026

How is this score calculated?

Weighted across six dimensions, scored 0-100.
Provenance (25): listed in an official or curated registry.
Installability (25): a runnable install command beats a declared transport, which beats a source checkout.
Maintenance (20): recency of the last push; archived entries score zero here.
Adoption (20): repository stars on a log curve.
Documentation (10) and description quality (10): parsed manifest or SKILL.md frontmatter, and a real description rather than a placeholder.

MCP manifest

{
  "_meta": {
    "io.modelcontextprotocol.registry/official": {
      "status": "active",
      "isLatest": true,
      "updatedAt": "2026-09-14T02:34:23.993456Z",
      "publishedAt": "2026-09-14T02:34:23.993456Z",
      "statusChangedAt": "2026-09-14T02:34:23.993456Z"
    }
  },
  "server": {
    "name": "io.github.yeyuan98/biomcp-ts",
    "title": "BioMCP-TS",
    "$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
    "version": "1.4.3",
    "packages": [
      {
        "version": "1.4.3",
        "transport": {
          "type": "stdio"
        },
        "identifier": "biomcp",
        "runtimeHint": "npx",
        "registryType": "npm",
        "registryBaseUrl": "https://registry.npmjs.org",
        "environmentVariables": [
          {
            "name": "ANALYSIS_BIOWASM",
            "description": "Set to 1 to enable the samtools/bedtools/bcftools biowasm analysis tools"
          },
          {
            "name": "ANALYSIS_R",
            "description": "Set to 1 to enable the R/Bioconductor analysis tools (requires the webr peer dependency; use the pinned one-shot client command)"
          },
          {
            "name": "DB_TYPE",
            "description": "Set to mysql or sqlite to enable the read-only SQL database tools"
          },
          {
            "name": "NCBI_API_KEY",
            "isSecret": true,
            "description": "Higher NCBI E-utilities rate limits (3 -> 10 req/s)"
          },
          {
            "name": "S2_API_KEY",
            "isSecret": true,
            "description": "Higher Semantic Scholar rate limits"
          },
          {
            "name": "OPENFDA_API_KEY",
            "isSecret": true,
            "description": "Higher OpenFDA rate limits"
          },
          {
            "name": "ONCOKB_TOKEN",
            "isSecret": true,
            "description": "Required by the variant_oncokb tool (OncoKB annotations)"
          },
          {
            "name": "DISGENET_API_KEY",
            "isSecret": true,
            "description": "Required for DisGeNET disease-gene associations"
          }
        ]
      }
    ],
    "repository": {
      "url": "https://github.com/yeyuan98/biomcp-ts",
      "source": "github"
    },
    "websiteUrl": "https://github.com/yeyuan98/biomcp-ts/blob/main/docs/AGENT-INSTALL.md",
    "description": "Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools."
  }
}

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