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Shotgun metagenomics workflow with host-depletion-aware QC, taxonomic profiling, functional profiling, AMR follow-up, and reproducible community output tables.
metagenomics is an agent skill entry in ChatHome Skills, sourced from GitHub Skill Search and scored 58/100. # Metagenomics ## Version Compatibility Reference examples assume: - `fastp` 0.23+ - `kraken2` 2.1+ - `bracken` 2.8+ - `metaphlan` 4+ - `humann` 3.9+ Verify the. As an agent skill, it packages a reusable instruction set that AI coding agents such as Codex and Claude Code can load to perform this task without hand-written glue code. ChatHome Skills discovered this entry through its daily ingest of official registries and GitHub discovery queries, and re-verifies repository facts, freshness signals, and install metadata on every run. The quality score weighs official-registry presence, a working install command, license clarity, GitHub star trajectory, and repository freshness — the full formula is on the Sources page. The install command above is ready to copy. Review the last-pushed date and repository status before adding metagenomics to a production agent workflow; the snapshot facts below are point-in-time values from the most recent ingest.
codex skill install zongtingwei/Bioclaw_Skills_HubReview the upstream source before running this command.
Scan coverage: Install metadata and the indexed document body.
Automated signals from install metadata and a bounded skill body — not a full code security audit and not a recursive source or dependency review.
# Metagenomics ## Version Compatibility Reference examples assume: - `fastp` 0.23+ - `kraken2` 2.1+ - `bracken` 2.8+ - `metaphlan` 4+ - `humann` 3.9+ Verify the environment first: